The former Brazilian leader has been arrested after authorities determined he posed a definite escape threat while under domestic detention.
The one-time leader was convicted of orchestrating a military coup in September and given more than 27 years in prison, but he remained under confinement pending appeals.
Top Judicial Official the presiding justice said the decision to arrest the septuagenarian politician was a safety action after fresh information were revealed.
This encompassed seeking to disable his electronic bracelet and a call for a supporters' gathering that could "allow for a potential flight.
In a paperwork permitting the arrest, the magistrate said intelligence from the unit overseeing Bolsonaro's house arrest suggested the ex-president's "intention to break the electronic ankle bracelet to guarantee victory in his escape.
This, it said, would be "facilitated by the confusion caused by the protest called by his son.
His son, Flávio, who holds office as a legislator, called for a meeting of his followers near Bolsonaro's home to take place on Saturday night.
The senator wrote on digital networks on the previous day: "Are you going to fight for your homeland, or watch it all from your phone there on your couch? I invite you to struggle with us."
He said the vigil would be so backers could "pray for his physical condition and for the restoration of democratic rule in our country."
Part of the judge's ruling was the chance of the former president's transfer to diplomatic missions near the dwelling, considering that the inquiries revealed a history of planning to seek refuge through a embassy office", a statement said.
The legal document highlights that the United States embassy in the national capital, Brazil's capital, is positioned around 13km from his dwelling.
The former president's legal troubles have drawn the ire of fellow populist conservative US President President Trump, causing him to enact a fifty percent tax on Brazilian product imports.
The former president is being held in a national police facility in Brazil's capital city and will have a custody hearing on Sunday.
It was only on Friday that the former president's lawyers asked the Supreme Court to authorize him to serve his whole jail sentence under home confinement, with digital surveillance.
They also petitioned that Bolsonaro be permitted to exit his dwelling for medical care, saying he needed ongoing care for pulmonary infections and other health problems.
Bolsonaro was found guilty of leading a scheme aimed at keeping him in power after he failed to win the national vote to his political opponent, Lula.
Supreme Court justices said that he was aware of a scheme which encompassed plans to murder Lula and his running partner, his vice-presidential candidate, and to detain and kill Justice Moraes - the High Court judge who has been presiding over Bolsonaro's trial.
The conspiracy was thwarted because it didn't receive the support of the armed forces officials. His successor was inaugurated without issue on 1 January 2023.
But a week later, on January 8th, thousands of his followers stormed and vandalised public facilities in the national capital, Brazil's capital.
The police stepped in and around 1,500 people were taken into custody.
The judges found that the protesters had been encouraged by him whose plan, they said, was for the country's army to intervene, reestablish control and bring him back to power.
At the period, Bolsonaro's lawyers called the decades-long sentence "absurdly excessive.
He was also prohibited from campaigning for office until twenty-sixty - eight years later after the conclusion of his imprisonment.
The ex-leader called the trial a "witch hunt and said it was intended to stop him competing in the 2026 national vote.
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